FastQCFastQC Report
Mon 6 Jun 2016
ERR1390771.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390771.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences833727
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGATAC403.465193E-739.36266732
ACCGGAT356.25967E-638.5593530
GTGTCGA250.002110018435.98872416
CCGGATA401.5634037E-533.7394331
GGATACG507.1713526E-526.99154533
ATCTCGT709.3278504E-725.70623240
TACGATC551.3706733E-424.53776736
TCTCGTA602.4719554E-422.49295241
AGACCGG500.002268216622.49295228
ATACGAT602.4719554E-422.49295235
CCTTCGT955.424263E-721.3577881
GATACGA654.245852E-420.76272434
CGTATGC654.245852E-420.76272444
CTCGTAT654.245852E-420.76272442
GACCGGA654.245852E-420.76272429
TCGTATG750.00111221117.99436243
CGTTGGA1156.66244E-515.6839565
TCGTTGG1251.3568247E-414.4283724
CCAACGA1150.001183034313.7234616
CGGGATT1150.001204137313.69136214
Produced by FastQC (version 0.11.5)