FastQCFastQC Report
Mon 6 Jun 2016
ERR1390766.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390766.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences723513
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTCGAA207.0409745E-444.98776642
CGTTGGG250.002109406335.99021517
AGACCGG504.8863512E-835.99021528
GACCGGA551.1294287E-732.71837629
TCTCGTA551.1294287E-732.71837641
TGACGGA300.005147635529.99806410
CTCGTAT602.4226392E-729.99184642
CAGGCGG406.1737257E-428.11735318
ACCGGAG709.3216295E-725.70729630
AGATCGG801.0554322E-725.30561817
TCGTATG801.0554322E-725.30561843
CGGAGTA751.7002149E-623.99347532
GATCGGA851.8966057E-723.81705518
ATCTCGT802.97925E-622.49388340
CGTATGC802.97925E-622.49388344
CCGGAGT802.97925E-622.49388331
CATCTCG955.5403507E-721.30999639
ATCGGAA955.5403507E-721.30999619
TCGGCTC855.0398085E-621.17071522
GAGACCG1009.0690264E-720.24449527
Produced by FastQC (version 0.11.5)