FastQCFastQC Report
Mon 6 Jun 2016
ERR1390765.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390765.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences865418
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTTC300.005156719629.98790728
CGTATGC901.2732926E-1129.98790644
TCGTATG901.2732926E-1129.98790643
ACGCCCG406.179458E-428.11366312
GACCGCA903.965397E-1027.48891329
CGCAGTA1004.5474735E-1126.98911532
ATCTCGT1058.54925E-1125.7068940
TCTCGTA1101.5279511E-1024.53555941
AGACCGC1052.3756002E-923.56192628
CTCGTAT1152.6557245E-1023.46879642
CGCCCGG654.2419884E-420.76565713
GTAGATC1301.2314558E-920.76325636
CCGCAGT1201.1094016E-820.61668631
ACCGCAG1251.7740604E-819.79201730
GAGACCG1302.78269E-819.03078727
GATCGGA951.3171708E-518.94410718
TGCGCAT600.00651569418.74677517
ACCCGGC901.8674602E-417.49698814
CGTGAGC1551.0595613E-817.4577221
CTTCGTA800.001713678716.8701467
Produced by FastQC (version 0.11.5)