FastQCFastQC Report
Mon 6 Jun 2016
ERR1390756.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390756.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences914127
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGACG250.002110368635.98787745
GAGACCG507.173247E-526.9909127
AGATCGG651.5266389E-524.22393617
GATCGGA751.7011844E-623.9932318
ATCTCGT602.4726018E-422.49242640
TCGTATG654.2469575E-420.76223843
CCGGCTA1151.5992009E-719.559716
CGTATGC706.997814E-419.2792244
GACCGAG706.997814E-419.2792229
GCGCCCG706.997814E-419.2792212
AGACCGA706.997814E-419.2792228
CACGCCC951.3173094E-518.94409811
GGGCGGA600.006515990518.7467638
CGGCTAA1202.5026748E-718.7447117
ACCACGC1709.276846E-1118.5262139
CGCCCGG851.2067048E-418.52418713
CCACGCC1608.1672624E-1018.27809510
CGGGATT1253.8424514E-717.99492314
CTCGTAT750.001112498317.99393842
TCTCGTA750.001112498317.99393841
Produced by FastQC (version 0.11.5)