FastQCFastQC Report
Mon 6 Jun 2016
ERR1390755.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390755.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences820803
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGCGAG207.040271E-444.98940318
ATCGGAA1100.030.67459119
GATCGGA1150.029.34091218
AGATCGG1200.028.11837417
TCGGAAG1350.024.9925920
CGGAAGA1400.024.09999721
TCTCGTA602.471631E-422.4933341
GCGGTTC1601.8189894E-1221.08878328
CCGAGAC1601.8189894E-1221.08749845
ACGGGAT908.263336E-619.99528913
AGCGGTT1757.2759576E-1219.28117227
ACCGTCT706.992217E-419.28117230
CTCGTAT706.995084E-419.27999742
AACGGGA1354.282265E-818.327912
TCGTTGG1607.9853635E-1018.3092924
CGGTTCA1851.6370905E-1118.23894529
GAGCGGT1851.6370905E-1118.23894526
AAGAGCG1851.6370905E-1118.23783524
ATCTCGT750.001111611317.9957640
CGTCTGT750.001111611317.9957632
Produced by FastQC (version 0.11.5)