FastQCFastQC Report
Mon 6 Jun 2016
ERR1390753.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390753.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences962875
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCGT250.00210948335.9911528
TCGTACA250.00210948335.9911516
GGCGCAA453.496124E-529.99262613
GATCGGA952.1200321E-823.67838918
TCGTAGA500.002268266422.49330137
AGATCGG1056.121081E-821.42330417
CGCAATC550.003941689620.44951615
GACCGTA550.00394287520.44845629
ATCGGAA1151.5988007E-719.56040819
ACCGTAT600.00652094718.7444230
ACCACGC1651.2314558E-917.7256779
TCGGAAG1358.6055843E-716.66170520
CCACGCC1907.999915E-915.39335110
CGCACCA900.003709104115.0267475
AGAGCGG1806.887785E-814.99631325
GCGGAGG1654.2119063E-714.99553532
ACGCCCA900.003760774414.99553412
CCGAGAC1502.580422E-614.99553445
GCGGTTC1553.6249057E-614.51256128
AGCGGTT1553.6249057E-614.51256127
Produced by FastQC (version 0.11.5)