FastQCFastQC Report
Mon 6 Jun 2016
ERR1390752.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390752.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences974757
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATAC401.5631524E-533.74107431
TTATACG300.00515353929.99206740
ACCGATA507.170198E-526.99285930
CGATACT507.170198E-526.99285932
GACCGAT551.3704525E-424.53896329
AGATCGG651.5265661E-524.22436117
GATCGGA651.5265661E-524.22436118
GAGACCG602.4715558E-422.49405127
CGTATGC654.245165E-420.76373944
CTCGTAT654.245165E-420.76373942
TCTCGTA654.245165E-420.76373941
GGTCTAC600.006519749318.74504321
CGTTGGA2050.018.6900355
GTATGCC1002.0507772E-517.9952445
TCGTTGG2053.6379788E-1217.5888124
TCGGAAG901.8690858E-417.49537320
TTCGTTG2400.016.9008793
ATCTCGT800.001713623316.87053740
CCGAGAC952.824495E-416.57456445
ATCGGAA952.824495E-416.57456419
Produced by FastQC (version 0.11.5)