FastQCFastQC Report
Mon 6 Jun 2016
ERR1390746.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390746.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1050964
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGCCC250.002083700436.0817455
CGCTATC554.1743733E-628.62764432
CCGCTAT654.8857146E-727.68387631
GATCGGA802.9822259E-622.49314918
CGTATGC754.6163455E-520.99160844
TCTCGTA754.6163455E-520.99160841
AGATCGG908.271883E-619.9939117
ACCGCTA807.579931E-519.68150530
CTCGTAT807.5854776E-519.67963242
GAGACCG951.3191155E-518.94159927
ATCGGAA951.3191155E-518.94159919
CTGCGAT600.00652517218.74250612
CCTTCGT1454.649337E-918.659411
AAAGCGC851.1835538E-418.5714865
CGGCTGA1102.2590957E-618.4061137
AAGCGGC1002.0101144E-518.037434
CCGGCTC750.001111342817.9970910
AGACCGC1002.0517324E-517.99451828
TCGGAAG1002.0534128E-517.99280720
AGCGGCT1153.374289E-617.6486785
Produced by FastQC (version 0.11.5)