FastQCFastQC Report
Mon 6 Jun 2016
ERR1390737.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390737.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences789355
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGTTCG300.005154270729.99049623
GATCGGA807.573902E-519.6825118
GCGCTCC851.20558965E-418.5258888
AGATCGG851.2061754E-418.52471517
TCGGAAG952.8247674E-416.57369620
ATCGGAA1104.644623E-516.3594919
CGCTCCA850.002567463815.87933359
CGGTTCA1108.600624E-414.31455329
CGCCACC950.005308860414.2366885
AGCGCTC950.00538081814.2078267
CCGAGAC950.005385342514.20602645
AAAGCGC1150.001184627113.7208655
GCGGTTC1000.007560924613.4965828
GAGCGGT1200.001659561213.12084226
CGGAAGA1300.003027232112.11154721
AAGAGCG1300.003027232112.11154724
AGAGCGG1300.003027232112.11154725
AATGCCG1350.00401087411.6644510
AGCGGTT1350.00401277311.66371127
AAGCGCT1400.00518213911.2707116
Produced by FastQC (version 0.11.5)