FastQCFastQC Report
Mon 6 Jun 2016
ERR1390736.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390736.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences773723
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATAG301.14144736E-437.4895531
GGCGCCG300.00515161829.9935828
TTACGGC300.00515324629.99164234
CTACGCC300.005154874629.98970620
GACCGAT406.1743625E-428.11716329
CGATAGT450.001228185624.99303432
ACCGCGC500.002239653122.5418052
CACCGCG500.002239653122.5418051
ATCTCGT702.7073393E-522.4937340
ACCGATA500.002267614722.4937330
TCTCGTA654.2463312E-420.76210241
CCGCGCC550.003893301620.4925523
TCGTATG550.00394322620.44752543
GCCGAGG1358.604311E-716.66094644
CGGCTAA952.8238562E-416.5743317
CGGAAGA850.002532580415.9118641
ACCATGC2202.1645974E-1015.33762559
CCGAGGT900.00376102314.99485245
TGAGCCG1553.62635E-614.51114745
CGGTTCA950.00538154714.2074849
Produced by FastQC (version 0.11.5)