FastQCFastQC Report
Mon 6 Jun 2016
ERR1390735.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390735.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1160135
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCTCG450.001228192824.994327
ATGCGCC602.4426417E-422.5337222
GATCGGA855.042224E-621.17164418
GCCGTGT550.00393979420.45164510
AGATCGG908.267631E-619.99544117
CATGCGC750.001099129818.0269781
CGCCCGG1002.0514402E-517.99512113
TCGGAAG1205.18442E-616.87115520
CCGGCTA1601.617991E-816.87115316
CCTTCGT1156.696352E-515.6756321
CGGAAGA1156.798312E-515.64793221
CGGCTAA1754.8767106E-815.42505517
CCGAGAC1351.5856367E-514.99593445
CGTTGGA1705.78606E-714.5812715
ACGGGAT1402.235713E-514.46036513
CGGGATT1251.3831482E-414.39671714
ATCGGAA1251.3831482E-414.39671719
AACGCAC1108.59765E-414.31615211
TTCGTTG1851.5028909E-613.397853
AATGCCG1709.416708E-613.23341710
Produced by FastQC (version 0.11.5)