FastQCFastQC Report
Mon 6 Jun 2016
ERR1390733.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390733.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1047892
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAACG406.1153417E-428.1645221
TCGATTA500.002267996522.49398824
ATCGATT602.4717744E-422.49398823
CCACCGC850.002565451715.8818987
CGCCCGG1209.7691074E-514.99670813
ATCGGAA950.005383426314.20740719
CGGCTAA1607.836879E-512.65347217
CCTTCGT1250.002227667512.6177061
ACCACGC2054.82619E-612.07282459
ACCCGGG1506.46004E-411.99736517
TCTTCGT1400.00519164811.2685016
GTTCACC1600.001110227811.24699427
CCGGCTA1853.0273997E-410.94354316
CGTTGGA1450.006741032510.8799325
TCGTTGG1450.00675062110.8778524
ACTAGAC4001.2369128E-1010.68515419
CTTCGTT1500.0086853210.5147542
CGGGATT1800.00295886659.99780514
TCGGCTC2504.358234E-59.89735422
CGAGATC2057.80258E-49.87540944
Produced by FastQC (version 0.11.5)