ERR1390722.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1390722.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	285477
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC	774	0.27112516945323095	Illumina Paired End PCR Primer 2 (100% over 35bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTCGTTAATCTCGTATGCC	368	0.12890705731109686	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTT	30	1.1401487E-4	37.486717	32
GTATGCC	35	2.820961E-4	32.13147	45
TCTCGTA	35	2.820961E-4	32.13147	41
GTCGTTA	35	2.820961E-4	32.13147	33
ATCTCGT	55	4.161997E-6	28.62622	40
TCGTTAA	40	6.167469E-4	28.115038	34
CGTATGC	40	6.167469E-4	28.115038	44
CTCGTAT	40	6.167469E-4	28.115038	42
CCGTCGT	40	6.167469E-4	28.115038	31
CGTTAAT	40	6.167469E-4	28.115038	35
ACCGTCG	40	6.167469E-4	28.115038	30
GACCGTC	45	0.0012268275	24.991146	29
TCGTATG	45	0.0012268275	24.991146	43
ATCGGAA	100	1.3405952E-9	24.741234	19
GATCGGA	95	2.1093001E-8	23.67582	18
CCGAGAC	110	4.0363375E-9	22.492031	45
AGATCGG	105	6.0901584E-8	21.420982	17
TCGGAAG	105	6.0901584E-8	21.420982	20
GCCACCG	55	0.0038779068	20.501165	6
AGACCGT	60	0.006512097	18.743359	28