FastQCFastQC Report
Mon 6 Jun 2016
ERR1390714.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390714.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences823735
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGAGCG207.0414745E-444.98785815
TGCGTAT300.00515474729.99008428
TCAACGC300.005156277729.98826212
CCTTCGT651.5020225E-524.2743361
CCGTGCC500.00226442422.49939210
ATCTTCG1055.968468E-821.4736335
TCTTCGT1507.068593E-918.0378516
ACGGGAT901.8687185E-417.4952813
CTTCGTA1401.2539913E-616.0709937
CGTGAGC1351.5538375E-515.026971
CTTCGTT1108.46875E-414.3439252
TCGTATA950.00537526314.2101439
ACGCCCA950.005388268714.204967512
CGTATAA1150.001201515413.69528310
TTCGTTG1504.1961637E-513.5242743
TCGTTGG1200.001633465213.1485984
CACGCCC1200.001656807613.12384811
GCCACCG1607.6646524E-512.6828636
TTCGTAT1250.00225103612.599668
TGAGCCG1801.69869E-512.495110545
Produced by FastQC (version 0.11.5)