FastQCFastQC Report
Mon 6 Jun 2016
ERR1390713.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390713.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences749028
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC8830.11788611373673615Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG702.1827873E-1135.34560443
CGTATGC754.7293724E-1132.9892344
CCGGTTC754.7293724E-1132.9892331
CGGTTCT852.0372681E-1029.10814532
GACCGGT852.0372681E-1029.10814529
ATCTCGT803.4033292E-928.1158240
CTCGTAT803.4033292E-928.1158242
TCTCGTA803.4033292E-928.1158241
ACCGGTT903.965397E-1027.49102630
AGATCGG1350.026.65796317
AGACCGG957.4396667E-1026.04412828
GATCGGA1251.8189894E-1225.19177418
GTCCGCC450.00122753524.9951787
TAACACG651.5266847E-524.22286225
ACGCAGA500.002268176822.49265731
ATCGGAA1459.094947E-1221.71704919
GAGACCG1156.7848305E-921.51471527
TCGGAAG1552.3646862E-1120.31594820
CGCTCCA1009.063042E-720.2460949
CCGAGAT1802.0736479E-1017.4942914