Basic Statistics
Measure | Value |
---|---|
Filename | ERR1390713.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 749028 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 883 | 0.11788611373673615 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 70 | 2.1827873E-11 | 35.345604 | 43 |
CGTATGC | 75 | 4.7293724E-11 | 32.98923 | 44 |
CCGGTTC | 75 | 4.7293724E-11 | 32.98923 | 31 |
CGGTTCT | 85 | 2.0372681E-10 | 29.108145 | 32 |
GACCGGT | 85 | 2.0372681E-10 | 29.108145 | 29 |
ATCTCGT | 80 | 3.4033292E-9 | 28.11582 | 40 |
CTCGTAT | 80 | 3.4033292E-9 | 28.11582 | 42 |
TCTCGTA | 80 | 3.4033292E-9 | 28.11582 | 41 |
ACCGGTT | 90 | 3.965397E-10 | 27.491026 | 30 |
AGATCGG | 135 | 0.0 | 26.657963 | 17 |
AGACCGG | 95 | 7.4396667E-10 | 26.044128 | 28 |
GATCGGA | 125 | 1.8189894E-12 | 25.191774 | 18 |
GTCCGCC | 45 | 0.001227535 | 24.995178 | 7 |
TAACACG | 65 | 1.5266847E-5 | 24.222862 | 25 |
ACGCAGA | 50 | 0.0022681768 | 22.492657 | 31 |
ATCGGAA | 145 | 9.094947E-12 | 21.717049 | 19 |
GAGACCG | 115 | 6.7848305E-9 | 21.514715 | 27 |
TCGGAAG | 155 | 2.3646862E-11 | 20.315948 | 20 |
CGCTCCA | 100 | 9.063042E-7 | 20.246094 | 9 |
CCGAGAT | 180 | 2.0736479E-10 | 17.49429 | 14 |