FastQCFastQC Report
Mon 6 Jun 2016
ERR1390711.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390711.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences832851
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGACG250.002110186535.98813620
GATCGTT300.00510500930.0496481
TCCGGCC500.002267638722.49393713
GATCGGA550.0039417920.44903418
TAGACGG600.00652142218.74382221
CCGAGAC600.00652142218.74382245
CACCGCG750.001097625818.0297871
CGCTTTG750.001112331817.99406845
ACCACGC1406.467417E-817.6791139
GCGGATC1104.5675144E-516.3917034
CCGCACC1004.1132414E-415.7760653
CGGCTAA1301.1084887E-515.57272417
GCCCGGC1502.5786503E-614.99595714
TGAGCCG1553.6266374E-614.51134645
ACCGCAC950.005315731314.2340432
CACCACG1901.3298086E-714.2109628
AGATCGG950.005383985614.206696517
GGCGGAT1150.001186385413.7183173
CGGATCA1352.6057492E-413.3602215
CCACGCC1709.392375E-613.23570110
Produced by FastQC (version 0.11.5)