FastQCFastQC Report
Mon 6 Jun 2016
ERR1390710.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390710.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences881035
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCTCG500.00226824622.49307639
GATCGGA855.043432E-621.16995418
CGCCCGC1109.7961674E-820.4901141
TCGGAAG908.269624E-619.99384520
CGGAAGA1053.1193176E-517.13758321
AGATCGG1053.1193176E-517.13758317
ATCGGAA1053.1193176E-517.13758319
CCGAGAC1205.185506E-616.86980645
CGGCTAA1552.071647E-715.96282817
CCGGCTA1451.8133596E-615.51246616
AGAGCGG1301.9303584E-413.84189225
CGTTGGA1504.190172E-513.5265525
GCCCGCC1851.4969391E-613.4016422
TCCAACG1403.5456297E-412.8824325
AGCGGTT1454.8591153E-412.40997327
GAGCGGT1454.8591153E-412.40997326
ACTAGAC3900.012.11165719
GCGGTTC1506.463031E-411.99630628
CGGTTCA1506.463031E-411.99630629
CGAGATC1506.463031E-411.99630615
Produced by FastQC (version 0.11.5)