FastQCFastQC Report
Mon 6 Jun 2016
ERR1390708.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390708.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences907267
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTG600.006520011518.74474329
ACGGGAT1257.638948E-616.19634813
ACCGTGA850.0025694115.87789830
TCGCTTG2052.1816959E-814.26507815
ATGCCCG950.00538486814.20654112
CGGGATT1453.1095307E-513.9623714
CGCTTGA1951.8324135E-713.84303416
CCGGCTA2002.4948713E-713.49695816
GAGCCGA1000.007563423413.49621440
ATCGCTT2205.511538E-813.29245914
CGGCTCA2156.010323E-712.55461827
AACGGGA1651.0451648E-412.26928512
TCGTTGG1902.9012914E-511.8596994
CGGCTAA1902.9525108E-511.83943717
CTACTCG1558.509309E-411.60964732
CGTTGGA1953.7750695E-511.5581575
ACTAGAC3753.8198777E-1111.3974319
TTCGTTG2004.9014205E-511.2660923
TCACCGT1400.00525488811.2499458
GTCAGTA1400.005263529311.24746419
Produced by FastQC (version 0.11.5)