FastQCFastQC Report
Mon 6 Jun 2016
ERR1390702.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390702.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536015
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGTC207.042348E-444.9838640
ACCGGTC301.1415168E-437.4865530
GACCGGT352.8243204E-432.1313329
ATCTCGT406.174757E-428.11491440
AGATCGG406.174757E-428.11491417
TCTCGTA406.174757E-428.11491441
CCGGTCA406.174757E-428.11491431
CTCGTAT450.001228266224.99103442
TATCTCG450.001228266224.99103439
TCGTATG450.001228266224.99103443
ATCGGAA450.001228266224.99103419
CCGCCAC500.002237201722.5445064
GATCGGA500.002267766522.4919318
TCGGAAG654.244427E-420.76178420
CGGGTGT550.003886955820.4969221
CGTATGC550.003942020720.44720844
AGACCGG550.003942020720.44720828
GCGGTTC706.980515E-419.2841938
CGGTTCA706.980515E-419.2841939
GAGACCG600.006519554618.74327527
Produced by FastQC (version 0.11.5)