FastQCFastQC Report
Mon 6 Jun 2016
ERR1390700.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390700.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences917070
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTACA250.00210990935.98948744
ACTTCGG551.3706219E-424.53828834
CTTCGGG750.001112167617.99474535
CCTTCGT1104.576349E-516.3883461
GCGGAGG1056.046098E-414.99643726
AACCCGG1951.1299562E-814.99562122
TCGTTGG1402.1974696E-514.4861264
GAACCCG1951.8339779E-713.84211221
ACCCGGG2205.516631E-813.29157323
CCCGGGA2053.37217E-713.16688524
CCAACGA1558.3750475E-411.6317096
CGTTGGA1802.3082014E-411.2682195
TTCGTTG1802.3105429E-411.2669883
AGTCTCG1400.00519601111.2669872
CCGGGAG2251.3628041E-510.99678825
AGACGGG1853.0286537E-410.9427543
TTCGAGA1450.006837604610.85889743
CTTCGTT1700.001813896910.6042232
GAATCGC2006.218664E-410.12204412
ACTAGAC2952.456305E-69.9134419
Produced by FastQC (version 0.11.5)