FastQCFastQC Report
Mon 6 Jun 2016
ERR1390699.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390699.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348459
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT300.00515419629.98593742
TCTCGTA450.001228191724.98828141
GAGACCG706.9853844E-419.27944227
ACCATGC1251.3798993E-414.3953159
CGGGGTT1300.002957195712.1463061
CTGGGTC1300.003024841712.10970643
TAGTCCC1400.005256392511.24634123
CCATGCC1450.006824933510.85853610
GAGCCAC2006.030052E-410.1523044
GCCACCA1800.002880019810.0269666
GAGTGTT1800.00295652159.99531334
GCTAATT2109.7023934E-49.6397219
TTCACAT1950.0057186919.2277668
TATCTTC3053.650608E-48.1366374
GAAGCAT3053.7712255E-48.11211527
GTAATCC3155.332875E-47.854586623
ATATCTT3451.5879054E-47.8460623
ATGTTGG2600.0067221697.78592813
AGCATTC3150.0046275167.139508729
GGCTGGT3250.0062595466.92082523
Produced by FastQC (version 0.11.5)