FastQCFastQC Report
Mon 6 Jun 2016
ERR1390694.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390694.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences904262
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC352.8246667E-432.13361444
TTGATCG300.00515392629.99137538
AGATCGG1250.026.99522217
GATCGGA1250.026.99522218
CCGAGAC1350.024.99281345
CCGCTTA450.0012284124.99281131
TCGTATG450.0012284124.99281143
ATCGGAA1450.023.27174219
ATCTCGT500.002268025722.4935340
AGACCGC500.002268025722.4935328
CGCTTAG602.4717502E-422.4935332
CCGCATC550.00390222420.484911
CCTTCGT1251.7362254E-819.8293931
GCGGTTC1757.2759576E-1219.28016928
AGCGGTT1757.2759576E-1219.28016927
CGGCTAA1302.7759597E-819.03509117
GACCGCT600.006520262518.7446129
GAGACCG600.006520262518.7446127
TATCTCG600.006520262518.7446139
TCGGAAG1851.6370905E-1118.23799920
Produced by FastQC (version 0.11.5)