FastQCFastQC Report
Mon 6 Jun 2016
ERR1390693.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390693.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences933492
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGACCGA250.002109529535.9908722
CAACCCG654.2446674E-420.76396640
GATCGGA706.9940474E-419.28082518
AAATCGA600.00651712218.7462511
AACCCGC600.006519137418.74524541
CGGAAGC800.001713424716.8707225
AGCGCTC952.822946E-416.5756327
AGATCGG850.002569022815.87832617
ACGGAAG1004.1740376E-415.74600724
CCTTCGT900.003712907715.02436351
GCGCTCC1056.0445204E-414.9970018
ATCGGAA900.003759554814.99619719
AAAGCGC1402.1951859E-514.487785
TCGGAAG950.00538406114.206923520
CGGTTCA1301.9296646E-413.84264329
ATCTTCG1150.001186848313.7178975
CCGAGAC1000.00756229113.49657745
AAGCGCT1555.7197714E-513.0857376
CTACTCG2104.5171873E-712.85388332
TCGTTGG1506.3624757E-412.01884654
Produced by FastQC (version 0.11.5)