FastQCFastQC Report
Mon 6 Jun 2016
ERR1390692.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390692.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences766784
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAACT401.5627269E-533.74104731
GCGCACC300.00511356430.0390592
CCACGAT300.005152879329.99204430
AGATCGG554.1690437E-628.63063817
GATCGGA554.1690437E-628.63063818
ACCGAAC507.1682734E-526.9928430
ATCTCGT608.203773E-626.24303840
TATCTCG551.3700864E-424.53894639
TCGGAAG651.5260232E-524.22434220
GAGACCG602.4698098E-422.495527
GACCGAA602.4709004E-422.49403429
ATCGGAA754.6071604E-520.995819
CTCGTAT654.2440483E-420.76372342
AGACCGA706.989969E-419.28185728
CGTATGC706.9930375E-419.280644
TCTCGTA706.9930375E-419.280641
TCGTATG706.9930375E-419.280643
CGCCACC1102.2219574E-618.436675
GAGCGGT1002.0487132E-517.996426
GCGGTTC901.8675087E-417.496528
Produced by FastQC (version 0.11.5)