FastQCFastQC Report
Mon 6 Jun 2016
ERR1390689.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390689.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences955897
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCCA1201.0855729E-820.6562463
CGCCACC1750.020.6058355
GGGCGAC750.001112022317.99520928
CCGCCAC1651.204171E-917.755064
ACCACGC1752.6902853E-916.7133339
CGCCCGG850.002569300115.87812513
GCCCGCC1402.1975578E-514.4861992
CCACGCC2052.1773303E-814.2674810
ACGCCCA950.005384639414.20674212
GGCGACA950.005384639414.20674229
CACCACG2601.8007995E-1013.8453658
CACGCCC1504.2755222E-513.49781811
CCGGCTA1352.6571951E-413.32978416
AGAGCGA1200.001659375613.12150735
GAGCGAG1250.002255543412.59664536
CAGAGCG1250.002255543412.59664534
ATCTTCG1454.779428E-412.4345555
GCCCGGC2106.3295247E-611.782577514
GCCACCA6400.011.6209666
TCGTATA1558.494104E-411.61224210
Produced by FastQC (version 0.11.5)