FastQCFastQC Report
Mon 6 Jun 2016
ERR1390687.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390687.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences900415
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTATCGT406.175074E-428.11722841
GATCGGA1052.3719622E-923.56622118
ACCGCGC602.4678398E-422.4987779
AGAACGG500.00226787222.4937820
CGTTCAC550.00394219320.4488945
CCGCGCC706.984411E-419.28466810
CACCGCG706.984411E-419.2846688
GCGCCCG706.994861E-419.28038412
CCCGCCA1302.7299393E-819.062843
CCGAGAC1302.779052E-819.03320145
TTTCGCT600.00645321718.7781856
ATCGTTC600.00651982418.74481643
AGATCGG1354.2799E-818.32928317
TCGGAAG1354.2826287E-818.32826620
GAGCGGT1354.2826287E-818.32826626
CGGTTCA1406.483606E-817.67564829
GCGGTTC1459.6788426E-817.06614328
AGCGGTT1459.6788426E-817.06614327
CGGAAGA1459.69103E-817.06424721
CCGCCAC1401.2366054E-616.0929034
Produced by FastQC (version 0.11.5)