FastQCFastQC Report
Mon 6 Jun 2016
ERR1390684.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390684.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences851241
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACCCG406.177069E-428.11545612
ATGCCCG651.5271564E-524.22254812
GATCGGA702.7090227E-522.49236318
CCGGCTA1656.002665E-1119.08442916
CGCCACC1302.7028364E-819.0790715
AGATCGG851.2071123E-418.52312317
CGGCTAA1751.4006218E-1017.9938917
ATCGGAA952.825583E-416.5733219
TCGTATA1104.6440597E-516.3600049
CCCGGCT2251.8189894E-1115.9945715
CCGCCAC1156.663584E-515.6837124
CTTCGTA1301.1080452E-515.5734667
TGCCCGG1806.892515E-814.9949113
CGGTTCA1056.0501415E-414.99490929
GCCCGGC2304.2564352E-1014.66893314
ATCTTCG1402.18424E-514.4951385
CGGAAGA1108.6072035E-414.31332221
TCGGAAG1108.6072035E-414.31332220
CCGAGAC1108.6072035E-414.31332245
CACCCGG950.00538661314.20570313
Produced by FastQC (version 0.11.5)