FastQCFastQC Report
Mon 6 Jun 2016
ERR1390681.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390681.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences744106
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA453.490664E-529.99816519
GATCGGA450.001226585624.9984718
AGATCGG500.002264670622.49862317
AGAGCGG602.469642E-422.495625
AAGAGCG500.002267325522.49408724
TCGGAAG654.243817E-420.76377120
GAGCGGT550.003939715720.45054226
CCCGCCA1008.9410605E-720.2746493
GACTCCG807.488063E-519.7114643
CCGCCAC1051.4274337E-619.309194
CGGCTAA1253.831192E-717.99889617
CGGTTCA750.001111180817.99647929
ACTCCGT901.8472926E-417.5213034
CGCCACC1053.0759482E-517.164885
CCGGCTA1257.623348E-616.19900716
GCGTGAA850.002567374115.87924611
ATGCCGA850.002567374115.87924611
CCGAGAC900.003758830314.996057545
CTCCGTC1108.500315E-414.3365755
GTTGGCC2451.0932126E-913.77466813
Produced by FastQC (version 0.11.5)