FastQCFastQC Report
Mon 6 Jun 2016
ERR1390679.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390679.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences962414
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATTGCGC406.106466E-428.1712285
TCTCGTA450.001228425824.99295641
TCGTATG551.3705951E-424.5385443
TTGCGCC500.002242835522.5369836
GACGGAA500.002268054322.49366223
GTACGTG550.0039389520.45197111
CTAGACG550.00394250820.44878220
CGCCCGG1351.9663275E-919.99644313
CCTTCGT951.2998813E-518.9735741
TACGTGA600.00652034118.74471912
AAAGCGC1002.017363E-518.0295875
CCGGCTA1551.0917574E-817.41625816
CGGCTAA1551.0917574E-817.41625817
ACCACGC2057.4578566E-1116.463919
AAGCGCT1104.5714965E-516.3905336
ACGGAAG1104.6474524E-516.35902624
CCACGCC2009.276846E-1015.75047310
GCCCGGC2353.6379788E-1115.31642514
GCGGAGG1209.772969E-514.99577432
CACGCCC1402.23187E-514.46246411
Produced by FastQC (version 0.11.5)