FastQCFastQC Report
Mon 6 Jun 2016
ERR1390662.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390662.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences983559
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAA507.170091E-526.99295429
GCGATCC450.001228660624.99220512
AGATCGG500.002267145822.49527217
GATCGGA500.002267145822.49527218
ACCGTGC654.236371E-420.7701459
AGACCGA654.245103E-420.76381128
CGGCTAA1101.0002623E-720.45024717
CGAACAT550.003942094320.44920732
ACCGAAC550.003942094320.44920730
CCGAACA600.0065196618.74510831
CGTTGGA1902.3646862E-1117.7928945
ACGGGAT1305.7932266E-717.30405613
CCGGCTA1358.598163E-716.66316416
ACCACGC1501.4213947E-716.5007279
CCCGGCT1501.4255238E-716.49653215
TCGTTGG2101.05501385E-1016.0942364
CCTTCGT1401.2371347E-616.0925961
GCTCCGC850.002568410715.87901636
CTTCGTT1602.9177681E-715.4891232
TTCGTTG2202.1282176E-1015.36111453
Produced by FastQC (version 0.11.5)