FastQCFastQC Report
Mon 6 Jun 2016
ERR1390660.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390660.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1016815
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTAAT300.00515510329.9903331
GAAACGC500.002266733422.4960659
ATCGGAA500.002268029422.49385319
ACCGCGC754.608165E-520.996339
GATCGGA550.00394246420.44895718
CACCGCG807.572069E-519.6840578
TCGTATA851.2058826E-418.5261739
CTTCGTA1205.1805328E-616.872057
CCGCGCC800.00171266416.8720510
CGTGAGC1904.3655746E-1016.610361
ACTAGAC4450.015.66987519
TTCGTAT1301.1079746E-515.5741998
CCACCGC1754.8714355E-815.4258747
CGCACCA900.00370654815.028423
ACGCCCA950.005386956514.20594612
CGTATAA1150.001203197913.69325710
GCCACCG1656.7668043E-613.6635476
CGCCTCT1000.007456277513.5255781
CTAGACA7250.013.34052620
TAGACAG7550.012.81043821
Produced by FastQC (version 0.11.5)