FastQCFastQC Report
Mon 6 Jun 2016
ERR1390645.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390645.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences748767
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCGAG250.002109465735.9901738
CGTATGC352.8250724E-432.13193544
AGATCGG855.456968E-1231.75391217
TCACGGT300.00515300229.9918068
TCCGAGA300.00515300229.99180639
GATCGGA901.2732926E-1129.98980518
TATGCCG300.00515468529.98980545
CGCTATC300.00515468529.98980529
ATCGGAA1058.54925E-1125.70554719
CTCGACT450.00122858724.99150542
CCGAGAC1101.5279511E-1024.53711345
TCGACTC551.3707392E-424.53711343
TCGGAAG1152.6557245E-1023.47028220
GCGGTTC1204.5292836E-1022.49235528
TCTCGTA500.002268353222.49235541
AGACCGC500.002268353222.49235528
TCGTATG500.002268353222.49235543
AGCGGTT1156.7866495E-921.51442327
GAGCGGT1156.7866495E-921.51442326
AGAGCGG1156.7866495E-921.51442325
Produced by FastQC (version 0.11.5)