FastQCFastQC Report
Mon 6 Jun 2016
ERR1390644.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390644.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences979156
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCCGT250.002109458235.991313
GCGCCGG250.002110515735.9876238
ATGCGCC500.002267555622.4945615
CTCGTAT702.709653E-522.49226442
TATCTCG702.709653E-522.49226439
GATCGGA1201.1090378E-820.61790818
CGTGAGT550.003943975520.44751235
GACCGGG807.581547E-519.6807329
ATCGGAA1302.7819624E-819.03191619
CGTATGC851.2073887E-418.5230444
TCTCGTA851.2073887E-418.5230441
AGATCGG1406.490882E-817.67429717
GAGACCG901.8695016E-417.49487727
AGACCGG901.8695016E-417.49487728
TCGGAAG1459.701034E-817.06309520
GCGCCCG800.001713369516.87092212
TCGTATG952.826223E-416.57324643
GCCACCG1501.3891258E-716.5340086
GCATGCG850.00256894115.87851313
CGGGAGT1156.800808E-515.64679232
Produced by FastQC (version 0.11.5)