FastQCFastQC Report
Mon 6 Jun 2016
ERR1390642.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390642.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1650265
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACCGC300.005154244629.99244327
TGTCCGG300.005154244629.99244335
GATCGGA1200.026.24259418
AGACCGC957.4396667E-1026.04607228
CGATCTA450.001228583924.99370439
CGCAAGT1001.3515091E-924.74151832
CTCGTAT1101.5279511E-1024.53704342
GACCGCA1104.0672603E-922.49433329
TGCGGGC602.4738733E-422.49228942
TCTCGTA1257.566996E-1021.59259841
AGATCGG1501.4551915E-1120.99407617
ACGCCCG754.6142133E-520.99407612
TCGGAAG1501.4551915E-1120.99280420
ATCGGAA1501.4551915E-1120.99280419
TCGTATG1301.2332748E-920.76211543
CCGCAAG1251.7756975E-819.79321531
CGTATGC1403.103196E-919.27910644
GGCGAGC600.006441694718.7851225
ATCTCGT1454.796675E-918.61430740
AGCCGGC851.2071729E-418.52474633
Produced by FastQC (version 0.11.5)