FastQCFastQC Report
Mon 6 Jun 2016
ERR1390639.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390639.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1278372
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACCGCG406.175939E-428.1176648
CGTATGC709.330106E-725.70758244
AGATCGG1301.8189894E-1224.22634517
GATCGGA1305.0931703E-1122.49501218
AGACCGG802.9809198E-622.49501228
CCTCGGG654.2438152E-420.76543815
TCGTTCA550.003941833520.45001218
TCGGAAG1452.2009772E-1020.16715220
ATCGGAA1452.2009772E-1020.16715219
TCGTATG908.271056E-619.99478543
CTCGTAT951.3189821E-518.94242942
CCGGAAC1102.2620134E-618.40429131
GACCGGA1002.0508347E-517.9960129
ATCTCGT1153.457868E-617.60410540
ACCGGAA1153.457868E-617.60410530
CGCCCGC901.844037E-417.5269721
CCACCGC1205.184942E-616.871267
CGGAACT1205.1868738E-616.870632
GAGACCG1104.6469813E-516.36000827
GCGGTTC1803.921741E-916.24639928
Produced by FastQC (version 0.11.5)