FastQCFastQC Report
Mon 6 Jun 2016
ERR1390632.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390632.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4217139
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTAACG654.2490673E-420.7632532
ATTGCGC1102.2218483E-618.440965
GATTGCG1002.0184832E-518.031164
TTACCGG800.001691094716.905822
ATCGCGC800.001692170516.9042135
TCGCGCC800.001692170516.9042136
GTACGGA800.001692170516.9042136
ACCGCGC1453.117016E-513.9613299
CCTTCGT6950.013.9467841
GCGGGAT1150.001205111613.69203313
CGTTGGA8250.013.3867715
TCGTTGG8250.013.1135714
CGGGATT6200.013.06106214
ACGCCCG2451.627268E-812.85359312
GATCGGA1751.2729921E-512.85359218
CGCCCGG3800.012.43092413
TTCGTTG9350.012.2939733
TTGCGCC1651.0274435E-412.2939726
ACGGGAT6550.012.01972313
ACCACGC6800.011.577419
Produced by FastQC (version 0.11.5)