FastQCFastQC Report
Mon 6 Jun 2016
ERR1390624.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390624.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1493008
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACTACG300.00515520729.99111435
GACACGA500.002269268522.49258217
TCGGCTA500.002269268522.49258228
CCGAGAC1351.9736035E-919.99273745
CCGCAGT600.006525053618.7431921
ATCGGAA1454.796675E-918.61392619
AGATCGG1507.2996045E-917.99406617
GATCGGA1507.2996045E-917.99406618
TCGGAAG1853.092282E-1017.02084420
ACGCCCG800.001714563716.8712
ACCACGC2057.4578566E-1116.4574369
CACGCCC1652.3692337E-816.3582411
CGACTTT850.002571296915.87711717
AGCGCTC1004.1796142E-415.744287
CGTGCCA1209.577966E-515.03231053
GGCGACA1055.9405615E-415.032314
AAAGCGC1502.5178051E-615.032315
CCGTGCC900.003762866414.99505510
GCGCCCG1150.001204763913.69159612
GCGCTCC1150.001205373213.6906788
Produced by FastQC (version 0.11.5)