FastQCFastQC Report
Mon 6 Jun 2016
ERR1390620.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390620.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197724
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTGAC250.002104408835.9947445
GAAGCAT1402.2146138E-514.462172527
TACTGTA950.00536040914.20844920
GCATTCT1453.0830983E-513.96347730
CAGAAAC2104.4512308E-712.85526437
CAGAAGC1607.7693665E-512.654425
CCAGCAC1801.6790835E-512.49817429
GACAGAA2003.6249457E-612.37319223
ATATCTT2054.7231842E-612.0836313
TATTCAA1350.003991414311.66496229
TAATCCC1558.4483076E-411.61120624
GCACTTT1802.328647E-411.24835732
CTAGACA1600.00110218211.24835620
AAGCATT1600.00110218211.24835628
TCTCAGA2452.8612503E-611.01879834
TAGACAG1853.001913E-410.94434621
TTTCACC1450.00674724910.871484
GTAATCC1700.00182808810.58668823
AGCATTC1500.00874347610.49846629
AGAAGCA2151.0291698E-410.46358726
Produced by FastQC (version 0.11.5)