FastQCFastQC Report
Mon 6 Jun 2016
ERR1390619.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390619.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences259379
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGAT453.4835924E-529.99614513
AGCGCTC453.4835924E-529.9961457
ACCGCGC300.0051432329.9961439
CCGCGCC300.0051432329.99614310
GCGCTCC300.0051432329.9961438
CGTCCAC300.0051432329.99614318
CGGGATT507.1436545E-526.99652914
AACGGGA551.3654075E-424.54230112
CGCTCCA551.3654075E-424.5423019
AAAGCGC602.4464814E-422.5188145
AAGCGCT654.229717E-420.766566
CCTTCGT550.003887659620.4914231
CGTTGGA550.003909467320.4716515
GGAAACG706.969557E-419.2832369
CTTCGTT600.00646593418.7656782
TCGTTGG600.00646593418.7656784
TTTGGAC600.00646593418.7656784
GCCACCG600.006502049518.747596
CCACCGC600.006502049518.747597
AAACGGG750.001108030117.99768611
Produced by FastQC (version 0.11.5)