FastQCFastQC Report
Mon 6 Jun 2016
ERR1390614.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390614.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230984
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCCCG207.0234004E-444.9976212
CGCCCGG253.8823106E-544.9976213
ACCACGC406.153017E-428.1235129
CGGCTAA702.6920317E-522.4988117
CCACGCC500.00225987122.4988110
GCCCGGC602.460117E-422.4988114
CCGGCTA654.2256268E-420.76813116
CACCACG550.0039283720.4534638
ATACCAG600.006497103318.74900843
CCCGGCT800.00170586616.87410715
GAAGCAT1652.3313987E-816.36277227
AGCATTC1803.8562575E-916.2491429
GGCTAAT1451.7945222E-615.5164218
AACTAGA1604.987218E-614.06175618
ATATCTT2254.807589E-914.0022913
TATCTTC2102.9414878E-813.9308514
GCTAATT1801.1118136E-613.74927119
ACTAGAC1709.330572E-613.23459419
GAGGCCT1250.002242997812.59933317
AATATCT2552.7759597E-812.3549622
Produced by FastQC (version 0.11.5)