FastQCFastQC Report
Mon 6 Jun 2016
ERR1390609.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390609.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230021
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTGCC300.005140258529.99826210
ATCTTCG507.115661E-527.010185
CGTATAA551.3640974E-424.54403110
TCGTATA551.3640974E-424.5440319
CTTCGTA602.460159E-422.4986977
ACTAGAC1003.6146957E-822.49869519
GGTTCAT550.003928436420.4533642
TCTTCGT706.962967E-419.2845956
TTCGTAT706.962967E-419.2845958
AAACTAG1459.5747964E-817.06797617
GTAGTCC800.001705895516.87402222
CATGAGC1004.1234295E-415.7627941
GTATAAA1156.748191E-515.65126611
GATTTTG1055.9739297E-415.0121841
GCTGTCA900.00374321814.9991338
TAGTCCC900.00374321814.9991323
AACTAGA1801.1118191E-613.74920318
GAGCCAC1000.007508164713.505094
CACACCC1000.007529805413.49921711
ACCCAGC1000.007529805413.49921714
Produced by FastQC (version 0.11.5)