FastQCFastQC Report
Mon 6 Jun 2016
ERR1390606.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390606.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93812
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGGCA207.0087507E-444.98880830
CGTATGC253.869059E-544.98880844
CTCGTAT253.869059E-544.98880842
CGGCATA253.869059E-544.98880832
GACCGGC207.0087507E-444.98880829
TCTCGTA253.869059E-544.98880841
TCGTATG253.869059E-544.98880843
GTATGCC301.133607E-437.49067745
CCGGCAT250.002099841435.99104731
GAGACCG250.002099841435.99104727
AGACCGG250.002099841435.99104728
CGAGACC250.002099841435.99104726
ATCTCGT352.8048933E-432.1348640
CTTCGTA300.005129708429.992547
TAGATCT406.1325956E-428.11800437
GATCTCG406.1325956E-428.11800439
CGGAAGA450.001201083725.0605741
CATAGAT500.002252510722.49440435
TTTGAGA500.002252510722.49440443
ATAGATC550.003915697320.44945736
Produced by FastQC (version 0.11.5)