FastQCFastQC Report
Mon 6 Jun 2016
ERR1390602.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390602.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences211406
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAACTG750.001107012917.997928
GCCCGGC750.001107012917.9979214
GAAACTA850.00255786315.88051639
GAATATC1000.007483002313.5112222
TCTAGAC1000.007530028513.49843920
TATCTTC1350.003963916611.6763654
GGAGTGC1558.3835336E-411.6225563
AGCATTC1558.4503967E-411.61156129
CTAGACA1400.00523658811.24869921
GAGGTTG1400.00523658811.24869929
AGAAACT1903.842968E-410.65666338
ATCTTCA1700.001814162510.5970365
TCTCAGA2201.2993831E-410.2260935
CAGAAAC2057.737259E-49.87690638
CATTCTC1900.00459653149.47258932
TAAAAAC2658.153036E-59.33854214
CTGGAGT2400.00321201288.4485141
CTCAGAA3053.7445838E-48.11381536
TTCTCAG2850.00172390637.89382434
Produced by FastQC (version 0.11.5)