FastQCFastQC Report
Mon 6 Jun 2016
ERR1390598.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390598.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences250743
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGAGC300.005142794529.99627732
CGGAGCT450.001224766524.99689733
CTAGCAG550.00393091420.45200718
GGAATAT600.006426757718.785141
AGGTACA750.00110785717.99776631
AGGCGGA750.00110785717.99776630
AGACGGG750.00110785717.99776642
CAGAAGC1358.527895E-716.66459826
ACTAGAC900.003746119614.99813820
GAGACGG900.003746119614.99813841
GGCGGAG900.003746119614.99813831
GAATATC1108.486122E-414.3335572
GCCACCA1851.5161731E-613.37671856
ATCTTCA1801.6829572E-512.4984486
TGCCACC1454.7977944E-412.4221635
TAGACAG1506.424727E-411.9985121
TATCTTC2452.1924825E-711.9468245
ATATCTT2656.057835E-711.0451784
TAGTAGA1650.001427397210.90773736
CCTTTTT1903.7782517E-410.6778681
Produced by FastQC (version 0.11.5)