FastQCFastQC Report
Mon 6 Jun 2016
ERR1390595.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1390595.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences251933
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGTTG600.006502347518.74718728
CGTTTTT600.006502347518.74718727
ACTAGAC901.8576985E-417.5008519
TGTAGTC850.00256027615.879971521
CCTGTAG1108.5524394E-414.31887619
GTTGCAG1000.007537006413.49797538
TATCTTC2155.872298E-712.568734
CTAGACA1600.0011040511.24831220
AATATGG1650.001427746310.90745511
ATATCTT2251.6176107E-410.0084323
AAAACTA1850.00368718229.73020216
GCCTGTA1900.00459546749.47414418
AATATCT2709.914013E-59.17439652
TAGACAG2000.00701984168.99865121
AGAAACT2750.00121408178.18059238
TCTCTTA3501.9290257E-47.71312945
AAATATC3805.8583468E-57.703862
GAAATAT2650.0078457117.65099431
GTCTCTT3200.00536400737.03019544
Produced by FastQC (version 0.11.5)