ERR1379385.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1379385.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1196485
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC	1936	0.16180729386494608	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACCGGA	280	40.981613	29
AGACCGG	295	38.8978	28
ACCGGAT	300	38.249504	30
CGTATGC	285	37.894245	44
TCGTATG	285	37.894245	43
CGGATCG	305	37.622463	32
TCTCGTA	295	37.372395	41
CCGGATC	310	37.015648	31
GAGACCG	310	37.015648	27
GGATCGA	315	36.428097	33
GATCGAA	305	36.14707	34
CTCGTAT	300	35.99953	42
CGAATCT	310	35.564053	37
TCGAATC	310	34.838257	36
ATCTCGT	320	33.74956	40
CGGTTCA	360	32.499577	9
GAGCGGT	360	31.877249	6
GCGGTTC	360	31.874584	8
AGCGGTT	370	31.013111	7
CCGAGAC	375	30.599604	25