ERR1379347.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1379347.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	964431
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTACTATCTCGTATGCC	1258	0.1304396063585679	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	175	38.572098	42
TCGTATG	180	37.498703	43
TATCTCG	190	35.526928	39
AATGCCG	190	35.525085	21
CGTATGC	195	34.61419	44
CGTGTAC	195	34.61419	32
TCTCGTA	200	33.750584	41
CCGTGTA	200	33.748833	31
GTATGCC	190	33.156746	45
GAGCGGT	210	32.146744	6
AGACCGT	210	32.141743	28
ATGCCGA	210	32.141743	22
ATCTCGT	215	31.395891	40
GACCGTG	215	31.394264	29
GAGACCG	230	30.325039	27
GCGGTTC	225	29.998962	8
CGGTTCA	225	29.998962	9
AGCGGTT	245	27.550068	7
CCGAGAC	245	27.550068	25
AAGAGCG	255	26.475164	4