FastQCFastQC Report
Mon 6 Jun 2016
ERR1379342.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379342.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2120769
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGGTTC2050.029.632898
TATCTCG1950.028.84764939
CGTATGC2000.028.12513444
AGACCGC2050.027.4378628
TCTCGTA2150.026.16414841
TCGTATG2150.026.16291443
CTCGTAT2200.025.57071542
GACCGCA2200.025.56709729
GAGACCG2350.024.89256127
GAGCGGT2450.024.7977896
AGCGGTT2650.023.7725777
ATCTCGT2500.023.40121540
CGGTTCA2650.022.9235579
AAGAGCG2700.022.5016984
AGAGCGG2700.022.5016985
CGCATCA2650.022.07453532
CCGCATC2550.022.05788631
CGGAAGA2950.021.3595581
ACCGCAT2850.020.52544430
ATGCCGA2900.020.17203322
Produced by FastQC (version 0.11.5)