FastQCFastQC Report
Mon 6 Jun 2016
ERR1379335.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379335.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464466
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCCCG250.002105868435.99982512
CGGCTAA352.8178858E-432.142717
CCGGCTA550.00393316920.45444916
CACGCCC550.00393316920.45444911
CGCCCGG550.00393316920.45444913
TCCGCCC600.006504970618.7499131
CGTGAGC850.002558482615.8856971
CCACGCC950.005369806714.21045810
GATGGTC1352.6467277E-413.3332694
GGCTAAT1506.436486E-411.99994318
GGAGTGC2656.1542414E-711.0376833
GCACTCC2056.379565E-510.97555616
GAACCCA2352.1913156E-510.53186421
ATGGTCT1954.90273E-410.3845655
CACTCCA2751.1448114E-59.81813417
GTGCAGT3257.9980236E-79.6922626
AACCCAG2606.658347E-59.51918522
GCTAATT3155.631753E-69.2856719
TATCTTC3258.371184E-68.9999574
GTTGCAG2555.750213E-48.82348732
Produced by FastQC (version 0.11.5)