FastQCFastQC Report
Mon 6 Jun 2016
ERR1379329.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1379329.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences314175
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGGGGT250.002101824236.010322
GTCTATC401.5573127E-533.74892418
CGAGACC602.4625065E-422.49928526
GCCACCA1453.0911797E-513.9650736
GGTGGCA1352.6430635E-413.3329098
ATCTTCC1650.001428043410.9087445
GTGCCTG1450.00680754410.86172316
AGCTACT3002.6587986E-710.49966530
GCCTGTA2952.4324509E-69.91493918
GCTACTC2150.00119937999.41830531
CAGCTAC3603.1695708E-79.374701529
GCTGAGG4051.8172977E-78.88860543
TGAGGCA3301.0120319E-58.86335545
TGGTGGC2801.4899866E-48.83900457
CCAGCTA3858.365332E-78.76595528
GGAGGCT3951.2096243E-68.54403239
CTGAGGC3909.382313E-68.07666644
CCCAGCT4051.5533584E-57.777529727
GTGGTGG2650.0079464927.6412666
AGGCTGA5107.3717456E-77.49976141
Produced by FastQC (version 0.11.5)